PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT30919
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 260aa    MW: 29309.4 Da    PI: 8.2207
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT30919genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.28.8e-06103133333
               --SS--HHHHHHHHHHHHHSSS--HHHHHHH CS
  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeL 33 
               k  ++t eq+e+Le+l++++++ps  + ++L
  OIT30919 103 KYVRYTLEQVEALERLYHECPKPSSLRHQQL 133
               67899********************999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MTSDQKNKHV CSAKSEAEMK LRRHETYRLI FAGKKEALLL QRRTKRQESK KRYLSDNDGF  60
HGTTEAAFEF QQQIVPLVGS SATVMMAVTS ACKDSKMGMD NEKYVRYTLE QVEALERLYH  120
ECPKPSSLRH QQLIRESLTT TDNNSCESVV TSGQQNLSAH RPPRDASPAG FLSLAEETLT  180
EFLSNATGTV MKWVQMPEMK VYWQGFSMDV HKIVQVDLKF PTKAIVSAVA KDFIDACKDS  240
TLEKVLGHTW IVQNADPSGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.11e-21HD-ZIP family protein