PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT31194
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 578aa    MW: 64762.5 Da    PI: 6.3502
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT31194genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS249.81.1e-761805602374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
               ++lL  cA a+++g+l+++q+lL  l+el+s +gd+++Rlaa  ++AL + l    s+s  +++  +++ +++n +   ++l  f+++sP++++   +aN+
  OIT31194 180 EQLLNPCAAAITAGNLNRVQHLLYVLHELSSLNGDANHRLAARGLQALTHYLCTpcSTSAPCASAGVTTFASTNPKFFKNSLINFNDISPWFRIPSSIANS 280
               689*************************************************99443444445555666666667777777777***************** PP

      GRAS 101 aIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlvakrled 188
                Il+ +e++     +Hi+D+++s+G+QWp+Ll++L+ R+ ++pp +R+T++ +  ++            +  +  ++L  fA+++++++++n l   +l++
  OIT31194 281 SILQILEEHdqpPNLHILDIGVSHGVQWPTLLEELTHRSgGPPPLVRLTVITPTIEKdqlkncpfvVGPAGYNFSSQLLAFAKAININLQINRLENYALQN 381
               *******99766789************************55666*******99766578888888888889999*******************9888**** PP

      GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..ns.esFlerflealeyysalfdsleaklpreseerikvE 286
               l+ + ++ +++E+l+++ +++lh+l    +s+++er+e+L+++ksl+Pk vv++e+++d+  ns ++F+++f++ +ey +++++s+++ +    + r + E
  OIT31194 382 LDSQVINSSSDETLVICAQFRLHNLK---HSSPDERTEFLRILKSLEPKGVVLSENNMDCscNScGDFATGFSRQVEYLWKFLESTSVAY----KGRESAE 475
               *************************8...67777788********************8875444259*******************9995....9999999 PP

      GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
               r++++ e+ +++++ g++    +e++ekW er++++GF    ++e+a + a+++l+k++ ++++rv+e++g++ l Wk++p+ ++S W+
  OIT31194 476 RRMMEGEAAKALTNMGEM----NERKEKWCERMRNVGFAREMFGEDAIDGARAVLKKYDsNWEMRVDEKDGCVGLWWKGEPVSFCSLWK 560
               999999***********9....88888********************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    
MIKHQSTLSH RTCSVSYTMT IDEPEPNPTS DPISEWLDGT LSYIPSFLNE LYSPDDFYGD  60
SWWVPGESID QEQQINNNNN NNLTAFNTRF DITTASTIPL EPIISSQPTP LVSSKKRKGN  120
DSDYNPKASR NNQNRRIKDA DDGEAIVDQR VPTKKSAGHK KATHKSTGNN SNNKEGRWAE  180
QLLNPCAAAI TAGNLNRVQH LLYVLHELSS LNGDANHRLA ARGLQALTHY LCTPCSTSAP  240
CASAGVTTFA STNPKFFKNS LINFNDISPW FRIPSSIANS SILQILEEHD QPPNLHILDI  300
GVSHGVQWPT LLEELTHRSG GPPPLVRLTV ITPTIEKDQL KNCPFVVGPA GYNFSSQLLA  360
FAKAININLQ INRLENYALQ NLDSQVINSS SDETLVICAQ FRLHNLKHSS PDERTEFLRI  420
LKSLEPKGVV LSENNMDCSC NSCGDFATGF SRQVEYLWKF LESTSVAYKG RESAERRMME  480
GEAAKALTNM GEMNERKEKW CERMRNVGFA REMFGEDAID GARAVLKKYD SNWEMRVDEK  540
DGCVGLWWKG EPVSFCSLWK IDTNTNESWN SQSNKNHV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-158GRAS family protein