PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT31275

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 198aa MW: 21925 Da PI: 7.7507

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT31275	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.6	1.9e-42	36	135	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i++lq+q+++l+a+la++++e OIT31275 36 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGSAGAIFQLQKQVNELQAQLAKAQAE 135 7***********************************************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence
MESSNRTVTT TKTPLSPCSV SPSRSSPSPP RVVVTPCAAC KILRRRCAEK CVLAPYFPPN 60 DPIKFTTAHR VFGASNIIKF LQELPESQRA DAVSSMVYEA NARLRDPVYG SAGAIFQLQK 120 QVNELQAQLA KAQAEVVNMQ CQQANLMALL YMEMDQSTPV SPEQSLDKLT STTFQSSMSF 180 LDDQNNNFGS LWDQPLWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-66	LBD family protein

Link Out ? help Back to Top
Ensembl	OIT31275