PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT31289
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 224aa    MW: 24568.9 Da    PI: 7.3661
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT31289genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.82.7e-312103197
    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
               +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA  r+ +Pv+Gavg++++++++++q+++e++l
  OIT31289   2 SCNGCRVLRKGCSENCILRPCLqwietAEAQGHATVFVAKFFGRAGLMSFISAVPENQRPSLFQSLLYEAAGRTVNPVNGAVGLLWTGNWHVCQAAVETVL 102
               6*********************9999777889****************************************************************99987 PP

    DUF260  97 l 97 
               +
  OIT31289 103 R 103
               6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MSCNGCRVLR KGCSENCILR PCLQWIETAE AQGHATVFVA KFFGRAGLMS FISAVPENQR  60
PSLFQSLLYE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALRPI PDFLGASLDI  120
DESSECTNVF KLQHPSQNNI QPTMQKRRRF PEEASKVLQL ADLDLSLTPG FQSQKVFSHA  180
LPENRRPGTP SMNSEESGTT TCFESGTVIG NHQGYEPKLL SLFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-86LBD family protein