PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT31413

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 543aa MW: 58223.9 Da PI: 7.416

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT31413	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.8	1.1e-39	152	255	3	112
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskksqk 102 + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++ + s +ss+s+ s++ +sk++++ OIT31413 152 PPKKQTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFStLNISLRSSGSTLSAP-------PSKSAPH 245 56899***************************************************************9997777777777744444.......3344444 PP TCP 103 saasalnlak 112 s ++al+la+ OIT31413 246 SFHNALALAA 255 4444444443 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MELSDLQNNN TNSTSKQNNN NNNTTSTTNT APSQPLHHQH QHQYQLLSHH FQQQHGRSSV 60 PFMTSISIQP SAPPGLTNSA SPTPTASTSA SPSTSSPTPP PQQQPPHLVD ASLAIATRSD 120 SLIDQNKKSQ PQQQQLAIQQ TQPAQQQLQT QPPKKQTKDR HTKVDGRGRR IRMPAACAAR 180 VFQLTRELGH KSDGETIEWL LHQAEPAIIA ATGTGTIPAN FSTLNISLRS SGSTLSAPPS 240 KSAPHSFHNA LALAAAHHPS HPFEEGFSHM LGFHQNPHLL TANPIAESIQ GGGGGGNSGD 300 GGGGQEGTEN YLRKRYREDL FKEEGSSNPQ GEASGGSSSP SNKQFKGNSS QLPKPSQEAV 360 AGPSASMLRH TNMMPATGLW AVAPPPTSGT TGSPFWMLPV TASGSGQTLS APMASTSGTT 420 TLESQMWPFP MGSSNTMQAP LHFMPRFNLP TNLEFQSGRG NPLQLGSMLM QQQQHQQQPS 480 QHLGLGMSES NLGMLAALNA YSRSGLNMNS DHQSHSLEHH QQHQQQHQPQ PADSEEDDPN 540 NSQ

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MELSDLQNNN TNSTSKQNNN NNNTTSTTNT APSQPLHHQH QHQYQLLSHH FQQQHGRSSV  60
PFMTSISIQP SAPPGLTNSA SPTPTASTSA SPSTSSPTPP PQQQPPHLVD ASLAIATRSD  120
SLIDQNKKSQ PQQQQLAIQQ TQPAQQQLQT QPPKKQTKDR HTKVDGRGRR IRMPAACAAR  180
VFQLTRELGH KSDGETIEWL LHQAEPAIIA ATGTGTIPAN FSTLNISLRS SGSTLSAPPS  240
KSAPHSFHNA LALAAAHHPS HPFEEGFSHM LGFHQNPHLL TANPIAESIQ GGGGGGNSGD  300
GGGGQEGTEN YLRKRYREDL FKEEGSSNPQ GEASGGSSSP SNKQFKGNSS QLPKPSQEAV  360
AGPSASMLRH TNMMPATGLW AVAPPPTSGT TGSPFWMLPV TASGSGQTLS APMASTSGTT  420
TLESQMWPFP MGSSNTMQAP LHFMPRFNLP TNLEFQSGRG NPLQLGSMLM QQQQHQQQPS  480
QHLGLGMSES NLGMLAALNA YSRSGLNMNS DHQSHSLEHH QQHQQQHQPQ PADSEEDDPN  540
NSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	7e-56	TCP family protein

Link Out ? help Back to Top
Ensembl	OIT31413