PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT31422
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 262aa    MW: 30755.2 Da    PI: 8.3455
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT31422genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-18449147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+++G+++W++Ia+ ++ gR++k+c++rw++ 
         OIT31422  4 RGHWRPHEDEKLRELVAKYGPHNWNAIAENLQ-GRSGKSCRLRWYNQ 49
                     899*****************************.************96 PP
2Myb_DNA-binding54.33e-175699146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     r ++T+eE+e+l+  ++ +G++ W+ Iar ++ gRt++ +k++w+ 
         OIT31422 56 RSPFTEEEEERLLASHRIHGNR-WAIIARLFP-GRTDNAVKNHWHV 99
                     789*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MCSRGHWRPH EDEKLRELVA KYGPHNWNAI AENLQGRSGK SCRLRWYNQL DPRINRSPFT  60
EEEEERLLAS HRIHGNRWAI IARLFPGRTD NAVKNHWHVI MSRRCRERSK IYSMRNIAAI  120
PKSTSQQDMS TTSPSDLQDN NNIHDIMRKR SSNISIDHHQ QLLERFNYYP FTNNNSLYPK  180
ELRFNHLPAH HLKMDDQGKN EAVECYDFLR VNIGSNKSEV VEDNITRRDA EEVEQEAGDN  240
NYSLQSRAPV RFIDFLSVGD SS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-79MYB family protein