PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT31667

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 861aa MW: 95022.2 Da PI: 8.8177

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT31667	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.7	7.2e-19	775	855	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+ +ev++Li++r e++ r++ + +++lWee+s+++ ++g++r+p qCk+ w + k+y++ k+ +k++ ++++yf ++ OIT31667 775 RWKPEEVKKLIKIRGELHGRFQVVRGRMALWEEISSRLVSGGINRTPAQCKSQWASQVKKYEASKNDKKSQ-----EKVAYFVDMS 855 8****************************************************************999984.....4568998885 PP

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence
LCPYKLCCQL NHNNRYISCS MPSSTNIGVR GSKGPHKIPA KTEGAGRSID DSVQRRMEQF 60 YEGSDGPPLR VLPIGGLGEI GMNCMLVGNY DRYILIDAGV MFPGDDDLGV QKIIPDTTFI 120 KKWNHKIEAV IITHGHEDHI GALPWVIPAL DSQTPIFASS FTMQLIKKRL KEFGIFVPSR 180 LKEFITRRKF TAGPFEVESI RVTHSIPDCS GLVLRCANGT ILHTGDWKID ESPLDGKVFD 240 REALEELSKE GVTLMMSDST NVLSPGRTLS ETVVADSLLR HISAAKGRVI TTQFASNIHR 300 LGSVKAAADL TGRKLVFVGM SLRTYLDAAW KDGNAPIDPS TLVKVEDIDA YAPKDLLIVT 360 TGSQAEPRAA LNLASYGSSH SLKLNKDDVI LYSAKVIPGN GSRVMKMLNR ISDIGSTIVM 420 GKNELLHTSG HAHREELEEV LKIVKPQHFL PIHGELLFLK EHELLGRSTG IHHTAVIKNG 480 EMLGISHLRN RKVLSNGFIS LGKENLQLMY SDGDKAFGTA AELCVDERLR IASDGLIVVS 540 MEVLRPQFAD SIAEKTLNGK IRITTRCLWL DKGKLLDALH KAAHAALSSC PVNCPLSHME 600 RTVSEVLRKM VRKYSCKKPE VIAIALEKTA GAPADEINGK LSRKADVCSG ISAFRKVLDG 660 DPRKRPPSPT NTEECNAHAY PTNDAEQQVK GDDMRAERFM HEEAITSSSN SQDNFSSGES 720 MSDITSSPVD QLQQGMPADL SQAGSEEMFR KVSIGLDLNL LEPKLQSSKP LKRNRWKPEE 780 VKKLIKIRGE LHGRFQVVRG RMALWEEISS RLVSGGINRT PAQCKSQWAS QVKKYEASKN 840 DKKSQEKVAY FVDMSNILSL K

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence

LCPYKLCCQL NHNNRYISCS MPSSTNIGVR GSKGPHKIPA KTEGAGRSID DSVQRRMEQF  60
YEGSDGPPLR VLPIGGLGEI GMNCMLVGNY DRYILIDAGV MFPGDDDLGV QKIIPDTTFI  120
KKWNHKIEAV IITHGHEDHI GALPWVIPAL DSQTPIFASS FTMQLIKKRL KEFGIFVPSR  180
LKEFITRRKF TAGPFEVESI RVTHSIPDCS GLVLRCANGT ILHTGDWKID ESPLDGKVFD  240
REALEELSKE GVTLMMSDST NVLSPGRTLS ETVVADSLLR HISAAKGRVI TTQFASNIHR  300
LGSVKAAADL TGRKLVFVGM SLRTYLDAAW KDGNAPIDPS TLVKVEDIDA YAPKDLLIVT  360
TGSQAEPRAA LNLASYGSSH SLKLNKDDVI LYSAKVIPGN GSRVMKMLNR ISDIGSTIVM  420
GKNELLHTSG HAHREELEEV LKIVKPQHFL PIHGELLFLK EHELLGRSTG IHHTAVIKNG  480
EMLGISHLRN RKVLSNGFIS LGKENLQLMY SDGDKAFGTA AELCVDERLR IASDGLIVVS  540
MEVLRPQFAD SIAEKTLNGK IRITTRCLWL DKGKLLDALH KAAHAALSSC PVNCPLSHME  600
RTVSEVLRKM VRKYSCKKPE VIAIALEKTA GAPADEINGK LSRKADVCSG ISAFRKVLDG  660
DPRKRPPSPT NTEECNAHAY PTNDAEQQVK GDDMRAERFM HEEAITSSSN SQDNFSSGES  720
MSDITSSPVD QLQQGMPADL SQAGSEEMFR KVSIGLDLNL LEPKLQSSKP LKRNRWKPEE  780
VKKLIKIRGE LHGRFQVVRG RMALWEEISS RLVSGGINRT PAQCKSQWAS QVKKYEASKN  840
DKKSQEKVAY FVDMSNILSL K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OIT31667