PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT31685

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 426aa MW: 47688.3 Da PI: 9.3365

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT31685	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	4.9e-06	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H OIT31685 53 YVCEICNQGFQRDQNLQMHRRRH 75 9*********************9 PP
2	zf-C2H2	16.1	3.1e-05	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ OIT31685 130 WVCEKCSKGYAVQSDYKAHLKTC 152 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MLSNNPSSSS DPFTSSENGN NANRRKRRPA GTPDPDAEVV SLSPKTLLES DRYVCEICNQ 60 GFQRDQNLQM HRRRHKVPWK LLKRETPIVR KRVFVCPEPT CLHHDPCHAL GDLVGIKKHF 120 RRKHSNHKQW VCEKCSKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES FIEHQDACSM 180 GRLRSESQSL HPSNCLSRTA SSPSPSSDTN LSTTPWPSTL LKNLSSTTHN ANQSIIKNST 240 KQHNLELQLL TTTTSSSSPF DVSVSSKPNE DHSTYNLQLS IGSSDFNERN ESSENATALD 300 ALKLKDEARE QLKLAMAEKA YAEEARQQAK RQIELAEKEF ANAKRIRQQA QAELDKANAL 360 KQQAIKQINS TLSQITCHSC KQKFQAPPSD GNNSLTLSYI SSALTEGHHE VGKNINHANH 420 LKLSQR

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MLSNNPSSSS DPFTSSENGN NANRRKRRPA GTPDPDAEVV SLSPKTLLES DRYVCEICNQ  60
GFQRDQNLQM HRRRHKVPWK LLKRETPIVR KRVFVCPEPT CLHHDPCHAL GDLVGIKKHF  120
RRKHSNHKQW VCEKCSKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES FIEHQDACSM  180
GRLRSESQSL HPSNCLSRTA SSPSPSSDTN LSTTPWPSTL LKNLSSTTHN ANQSIIKNST  240
KQHNLELQLL TTTTSSSSPF DVSVSSKPNE DHSTYNLQLS IGSSDFNERN ESSENATALD  300
ALKLKDEARE QLKLAMAEKA YAEEARQQAK RQIELAEKEF ANAKRIRQQA QAELDKANAL  360
KQQAIKQINS TLSQITCHSC KQKFQAPPSD GNNSLTLSYI SSALTEGHHE VGKNINHANH  420
LKLSQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-139	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT31685