PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT31695
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28059.8 Da    PI: 8.4133
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT31695genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.91.8e-30959151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              k+ienk+nrqvtf+kRrng+lKKA+ELSvLC+aeva+iifs++gklye+ss
  OIT31695  9 KKIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSTRGKLYEFSS 59
              68***********************************************96 PP
2K-box88.81e-29841759100
     K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 +a++e+ ++e+ kLk+++e+Lqr qRhllG++L++L++ eL++Le qL++slk+i+s++++l+l+q+ +lq kek   e+nk L++klee
  OIT31695  84 GRDANEEKFYREYLKLKAKYESLQRYQRHLLGDELGPLNIDELEHLELQLDTSLKHIKSTRTQLMLDQLTDLQTKEKLWIEANKGLERKLEE 175
               5688999**********************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MGRGRVELKK IENKINRQVT FAKRRNGLLK KAYELSVLCE AEVALIIFST RGKLYEFSST  60
SNTLKTLERY QKCSYGTLEV KQSGRDANEE KFYREYLKLK AKYESLQRYQ RHLLGDELGP  120
LNIDELEHLE LQLDTSLKHI KSTRTQLMLD QLTDLQTKEK LWIEANKGLE RKLEEIYAEN  180
NLQQSWGGGE QSGAYSQQHP QTQGFFQPLE CNSTLQIGYD PASSSQITGV TSGQNISGIV  240
PGWML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.15e-92MIKC_MADS family protein