PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT31857

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 185aa MW: 21234.1 Da PI: 10.1884

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT31857	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.1	1.5e-20	16	61	2	47
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +ien+ nrqvtfskRrng++KKA+EL v+++aev +i+f + k y OIT31857 16 KIENQNNRQVTFSKRRNGVFKKANELAVMTGAEVGIIVFPPGSKPY 61 79************************************98776655 PP

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence
MSTRLIKGRK SVRLAKIENQ NNRQVTFSKR RNGVFKKANE LAVMTGAEVG IIVFPPGSKP 60 YSFGHPNVNE TIDKYVGEER PPSPSSPGID GKYVQMFQKT NSITLNTQLN TLQDQLDFAL 120 NLKSKLKEKN KNLESQQDWF KGPIERMNYT EASMLKERLE HLHLKVKNYD TEHGYGYENG 180 KWKAE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	4e-26	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT31857