PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT31875
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 318aa    MW: 36177.6 Da    PI: 5.764
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT31875genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.63.8e-091885269
  trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69
              Wt +e l+L++  ++++ + +++ +  ++W++   ++ + g++rs +qCk++we +   y k+k +e 
  OIT31875 18 WTLHESLTLVNEMKSTQIECGNTLASFQKWQSTVHNCNSLGVNRSLNQCKKRWEFMLENYNKVKPWET 85
              ****************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MEKSGGSLRT RSQVAPDWTL HESLTLVNEM KSTQIECGNT LASFQKWQST VHNCNSLGVN  60
RSLNQCKKRW EFMLENYNKV KPWETAYWTT SFDGDRKSEL GLPEEFDFEL FSAIGRYLSL  120
LQGEDGGGAE TDPDSDPEAQ QAQGNNSLLE IGLKRQRRRT KPRKYKMEER LNPWRRILNE  180
NRKYEQSMVG IKHEASVDAK LEAPSHEKSS LQIKRETSSQ EEKAELPSLS LVNTVKAEQI  240
NVDNPEEMMA ATLRENAELI TAIIEGSPMD DRDCRLADLK NFEAGRVHLI RSQGSQLIEC  300
LGKISDTLSQ LCDSIHKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.16e-48Trihelix family protein