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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIT32042 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 253aa MW: 28986.9 Da PI: 4.7685 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 62.3 | 7.2e-20 | 43 | 95 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++f++eq++ Le++Fe++ ++ +++++LA++lgL+ rqV +WFqN+Ra++k
OIT32042 43 TRRFSDEQIKSLETMFENETKLEPRKKQQLARELGLQPRQVAIWFQNKRARWK 95
469*************************************************9 PP
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| 2 | HD-ZIP_I/II | 123 | 1.5e-39 | 42 | 133 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
+ rr+s+eq+k+LE++Fe+e+kLep++K++lareLglqprqva+WFqn+RAR+k+kqlE+dy+ Lk+++d+l+++ ++L+ke+++L +l++
OIT32042 42 NTRRFSDEQIKSLETMFENETKLEPRKKQQLARELGLQPRQVAIWFQNKRARWKSKQLERDYNILKSNFDNLASQYNSLKKENQSLLFQLQK 133
569***********************************************************************************999886 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 253 aa Download sequence |
MFDGGEFSCT SSAAALNSAE CFSSSSFSSL PSSKKKKVNN KNTRRFSDEQ IKSLETMFEN 60 ETKLEPRKKQ QLARELGLQP RQVAIWFQNK RARWKSKQLE RDYNILKSNF DNLASQYNSL 120 KKENQSLLFQ LQKLNDLMQK SEKEGGQYCS IGFDQESYNR DNNTIKNKEM EGKPSLSFDL 180 SEHGVNGVIS DDDSSIKADY FGLDEESDHL LKMVEAGDSS LTSPENWGTL EDDGLLNQQP 240 NGCNYDQWWD FWS |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT2G46680.1 | 8e-71 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIT32042 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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