PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT32058
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 225aa    MW: 26215.6 Da    PI: 4.8735
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT32058genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.6e-203992356
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               R++f++eq++ Le +Fe +  p  +++++LAk+lgL+ rqV +WFqN+Ra+ k
  OIT32058 39 MRRRFNDEQIRSLEHMFETEARPELRTKQQLAKSLGLQPRQVAIWFQNKRARSK 92
              699*************************************************99 PP
2HD-ZIP_I/II103.71.5e-3340130393
  HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +rr+++eq+++LE++Fe+e + e + K++la++Lglqprqva+WFqn+RAR k+kql+++y++Lk +yd+l ++ e+L+ke+e+L  +l++
     OIT32058  40 RRRFNDEQIRSLEHMFETEARPELRTKQQLAKSLGLQPRQVAIWFQNKRARSKSKQLDMEYRMLKISYDNLGSKYEMLKKENESLLIQLQR 130
                  79***********************************************************************************999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MSVGERLPTN SSMWSQSSLL GKDLNLHSMS SIKNCKDNMR RRFNDEQIRS LEHMFETEAR  60
PELRTKQQLA KSLGLQPRQV AIWFQNKRAR SKSKQLDMEY RMLKISYDNL GSKYEMLKKE  120
NESLLIQLQR LRKLTEKGGN EEIQNEGNKL DTEVIKSEFI PETCSPEFGL PLCEDSREID  180
YMGPESDILN MAQIADGLSE IENECNFESR TFLDDSDCRS PLWEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-39HD-ZIP family protein