PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32081

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

RAV

Protein Properties

Length: 362aa MW: 41326.1 Da PI: 9.2631

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32081	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.3	3.9e-13	59	107	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g OIT32081 59 SRFKGVVPQP-NGRWGAQIYEK-----HQRIWLGTFNDEDEAAKAYDIAAQRFRG 107 689*9788.8*****3.....5******99***********98 PP
2	B3	99.9	1.6e-31	189	285	1	95
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+ tpsdv+k++rlv+pk++ae++ + ++ +++ l led +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F +++ +++l++ OIT32081 189 FEKAVTPSDVGKLNRLVIPKQHAERYfplE-NNSKGMLLNLEDMNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFGRSNGVDKQLYID 285 89***********************964.45689***********************************************9876666666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MDGSCCIEQE STTSDPPSFA PTLISTRLSR MGSGTSSVII DAELNCSIEA DSNKKLPSSR 60 FKGVVPQPNG RWGAQIYEKH QRIWLGTFND EDEAAKAYDI AAQRFRGKDA VTNFKPLFDS 120 EKEEIEISFL NTRSKAEIVD MLRKHTYYDE LEHSKKVYSF DKNGKRECEN GPLTSFAVEK 180 LSKARELMFE KAVTPSDVGK LNRLVIPKQH AERYFPLENN SKGMLLNLED MNGKVWRFRY 240 SYWNSSQSYV LTKGWSRFVK EKNLKAGDIV SFGRSNGVDK QLYIDWKARI SSTTTPVFDK 300 IQVQVQPVKM VRLFGVNCKV QDVNNVVNVE NNMSSCSGGK RMREMELLAF ECRKKQRVID 360 VL

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MDGSCCIEQE STTSDPPSFA PTLISTRLSR MGSGTSSVII DAELNCSIEA DSNKKLPSSR  60
FKGVVPQPNG RWGAQIYEKH QRIWLGTFND EDEAAKAYDI AAQRFRGKDA VTNFKPLFDS  120
EKEEIEISFL NTRSKAEIVD MLRKHTYYDE LEHSKKVYSF DKNGKRECEN GPLTSFAVEK  180
LSKARELMFE KAVTPSDVGK LNRLVIPKQH AERYFPLENN SKGMLLNLED MNGKVWRFRY  240
SYWNSSQSYV LTKGWSRFVK EKNLKAGDIV SFGRSNGVDK QLYIDWKARI SSTTTPVFDK  300
IQVQVQPVKM VRLFGVNCKV QDVNNVVNVE NNMSSCSGGK RMREMELLAF ECRKKQRVID  360
VL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-132	RAV family protein

Link Out ? help Back to Top
Ensembl	OIT32081