PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT32150
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25466 Da    PI: 9.3249
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT32150genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.98.6e-26959151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              k+i+n + rqvtfskRr g++KKA+ELS+LCda++ +i+fs tgkl++yss
  OIT32150  9 KKIDNLTARQVTFSKRRRGLFKKAQELSTLCDADIGLIVFSATGKLFDYSS 59
              68***********************************************96 PP
2K-box48.34.4e-1783173999
     K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
               l++ + +s ++++  L +e  +  re+R+l Ge+L+ L l+eL++Le+ +e +++++ + K e ++++i+ l+kke +lqeen +L+++ +
  OIT32150  83 LQSFNLQSEKKNYGMLSREFAEKNRELRQLNGEELQGLGLEELMKLEKIVEGGISRVMKIKGEKFMREISSLKKKEAQLQEENSQLKQQSQ 173
               677788999999999999999999***************************************************************9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MVRQKIQIKK IDNLTARQVT FSKRRRGLFK KAQELSTLCD ADIGLIVFSA TGKLFDYSSS  60
SMMQLIDKHK VHSERDMDSP DQLQSFNLQS EKKNYGMLSR EFAEKNRELR QLNGEELQGL  120
GLEELMKLEK IVEGGISRVM KIKGEKFMRE ISSLKKKEAQ LQEENSQLKQ QSQQARLNEV  180
EGHNTIEGGH SADSITTNRS LVNGHLDYID SDTSLKLGLP FPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.18e-57MIKC_MADS family protein