PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT32213
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 494aa    MW: 56589.5 Da    PI: 4.9356
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT32213genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS178.83.9e-551274931373
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l +lL +  ea+++g++ela+ ++  ++   +p g++++R+a+     L  ++ ++          +++s   s +   a+k+f++++Pi kf+h++aN+a
  OIT32213 127 LHHLLAAYGEAIENGHKELAEVIIRSIKGKINPLGESLERVASN----LFLKIEDQE------DYLKQES---SNNLEVAFKAFYQIFPIGKFAHFAANSA 214
               579999***********************************975....788888811......1222333...4555568899****************** PP

      GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
               Ile++  + e++Hi+Dfd+++G+QWp++++a+ +R++    l++T +++ +++   ++ + ee+++rL ++A+ +g++++++ +   ++e+l  e+ r+k+
  OIT32213 215 ILESIPDDvETIHIVDFDMGEGIQWPPIIEAICQRRKA---LKLTSIKKTKEEstsDQWRFEEIKRRLLDYAKPFGLRLQIEEM---TVEELASEMRRMKK 309
               *****9999**************************776...*******98777888999***********************98...55566555555555 PP

      GRAS 199 ....gEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqe...adhnsesFlerflealeyysalfdsleaklpres.eerikvE 286
                   +E l+ n++++l ++ + +  ++        +e+L +  s+   +v++ + e     hn+++F + f + l yy ++f+sle  +p+   e+r  +E
  OIT32213 310 rgkgNEWLVFNCMFKLPHMGKTRCRIHAleflkLAKEMLLANSSTHTGLVTFGDGEamdNRHNTNTFSTFFNKNLVYYQSIFESLELYFPAYLaEARLAME 410
               5677***************97776666633333444555555567899******99433356999************************998779****** PP

      GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.sgslvlgWkdrpLvsvSaW 373
                 ++++++++    ++ e      ++++  +  +e G+k  ++s+++  qak l+++ +     r+ee+ ++++vl Wk+ pLvsvS W
  OIT32213 411 SLFIAPQVCSFSWFQNWE------EMRNTCDSCGEIGLKGKRISKENLLQAKELVNEREtPLKVRIEEQrQHEMVLEWKGTPLVSVSIW 493
               ********9998888887......344447899************************99655588885549999*************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    
MMQSELLRNS WSSTFPQTEF CAIQIENKKY GLSDSSLNSS GIAFSDFTSL FPDDVFTDLS  60
MDDLEFDDVC RWLNDSEGNE NMNISISCEM QKDGNLWSPA ISGVSTNSAI SLVIPGNSKE  120
MNTQISLHHL LAAYGEAIEN GHKELAEVII RSIKGKINPL GESLERVASN LFLKIEDQED  180
YLKQESSNNL EVAFKAFYQI FPIGKFAHFA ANSAILESIP DDVETIHIVD FDMGEGIQWP  240
PIIEAICQRR KALKLTSIKK TKEESTSDQW RFEEIKRRLL DYAKPFGLRL QIEEMTVEEL  300
ASEMRRMKKR GKGNEWLVFN CMFKLPHMGK TRCRIHALEF LKLAKEMLLA NSSTHTGLVT  360
FGDGEAMDNR HNTNTFSTFF NKNLVYYQSI FESLELYFPA YLAEARLAME SLFIAPQVCS  420
FSWFQNWEEM RNTCDSCGEI GLKGKRISKE NLLQAKELVN ERETPLKVRI EEQRQHEMVL  480
EWKGTPLVSV SIWM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-23GRAS family protein