PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32300

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 493aa MW: 51648.9 Da PI: 8.1591

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32300	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.6	3.6e-12	53	77	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ OIT32300 53 EPDCIYYLRTGFCGYGARCRFNHPR 77 799********************96 PP
2	zf-CCCH	37	5.6e-12	99	123	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ OIT32300 99 QPVCQYYMRTGMCKFGASCKYHHPR 123 689********************96 PP
3	zf-CCCH	32.7	1.3e-10	144	168	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++ +tG+Ck+G +CkF+H+ OIT32300 144 GEKECSYYVKTGQCKFGVTCKFHHP 168 7899********************8 PP
4	zf-CCCH	37	5.5e-12	314	340	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++++G CkyG++C+++H+p OIT32300 314 PGQPECQYYMKYGDCKYGSSCRYHHPP 340 5789*********************97 PP
5	zf-CCCH	35.6	1.6e-11	362	386	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C+++a++G Ck+G++CkF H++ OIT32300 362 APICSHYAQNGVCKFGPSCKFDHPM 386 589********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MERYSGTQSM EVGAPVDPVS EWTVPGGETG LEEPMWQLSL NTGPESYPER PNEPDCIYYL 60 RTGFCGYGAR CRFNHPRDRN SVLGAMRAIG GEYPERVGQP VCQYYMRTGM CKFGASCKYH 120 HPRQGGGSPA PVTVNIYGYP LRPGEKECSY YVKTGQCKFG VTCKFHHPHP AGAQVPAPAA 180 GPGPLAVPAA VPAPHIYPTV QSPSVQSAQQ YGVVSGNWPV ARPTLLPGSY IPGTYGSMLL 240 PPGMVPLPGW TPYPAPASPA PSPSTQPPAA AGPIYGLSQL SPSAPAYLGP YLSVASASGP 300 SSSSQKEHAF PERPGQPECQ YYMKYGDCKY GSSCRYHHPP EWSGPKTSFI LSAMGLPLRP 360 GAPICSHYAQ NGVCKFGPSC KFDHPMGMSY SPSASSLADM AVAPYPVGSS IGTLAPSSSS 420 SDLRPELVSG SGRDAFSTQI SSMSTSSGSV GSMFSKGGHA SHSGVQQSVQ SSNPSSGSSS 480 SSAGHGGEAR TSS

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MERYSGTQSM EVGAPVDPVS EWTVPGGETG LEEPMWQLSL NTGPESYPER PNEPDCIYYL  60
RTGFCGYGAR CRFNHPRDRN SVLGAMRAIG GEYPERVGQP VCQYYMRTGM CKFGASCKYH  120
HPRQGGGSPA PVTVNIYGYP LRPGEKECSY YVKTGQCKFG VTCKFHHPHP AGAQVPAPAA  180
GPGPLAVPAA VPAPHIYPTV QSPSVQSAQQ YGVVSGNWPV ARPTLLPGSY IPGTYGSMLL  240
PPGMVPLPGW TPYPAPASPA PSPSTQPPAA AGPIYGLSQL SPSAPAYLGP YLSVASASGP  300
SSSSQKEHAF PERPGQPECQ YYMKYGDCKY GSSCRYHHPP EWSGPKTSFI LSAMGLPLRP  360
GAPICSHYAQ NGVCKFGPSC KFDHPMGMSY SPSASSLADM AVAPYPVGSS IGTLAPSSSS  420
SDLRPELVSG SGRDAFSTQI SSMSTSSGSV GSMFSKGGHA SHSGVQQSVQ SSNPSSGSSS  480
SSAGHGGEAR TSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-131	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT32300