PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32304

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 315aa MW: 35739 Da PI: 7.4685

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32304	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.9	6.2e-20	10	57	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd++l+d+++++G+g+W+t ++ g+ R++k+c++rw +yl OIT32304 10 KGPWTTEEDQKLIDYIQKHGSGNWRTLPKNAGLQRCGKSCRLRWTNYL 57 79********************************************97 PP
2	Myb_DNA-binding	53.3	6.3e-17	63	107	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eE+e +++++ lG++ W++Ia +++ gRt++++k++w+++ OIT32304 63 RGKFSLEEEETIIHLHSILGNR-WSAIAGRLP-GRTDNEIKNYWNTH 107 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence
PCCDKSGLKK GPWTTEEDQK LIDYIQKHGS GNWRTLPKNA GLQRCGKSCR LRWTNYLRPD 60 IKRGKFSLEE EETIIHLHSI LGNRWSAIAG RLPGRTDNEI KNYWNTHIRK KLLRMGIDPV 120 TQSPRLDLLD LTSIFNPSLY NSSQLNLSRL LGVQSLVSPE ILKIATSLFS SNSQNQNFLL 180 PSNFQENQLY NSHVQNQLSQ FVQSSQIHTP IQNIPSIPFY GEAQVMQQPN VEQFSSNISN 240 LSSQNCQLSE WQNYTFESLL STLSTPSSSP TSLNSNSTCI KSSSTISEED QRESYCSSML 300 NFDISNSLDV NHDFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-101	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT32304