PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT32452
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 127aa    MW: 14578.8 Da    PI: 5.0012
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT32452genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260105.15.7e-3312112199
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
               +CaaC +lr+kCa++C lapyfp++++++f+nv +lFG+sn++++l+++  ++e++ ++++sl+ eA++r ++PvyG++++ +kl+  ++++++el+ +++
  OIT32452  12 KCAACMYLRKKCAANCQLAPYFPSDRTEDFQNVYQLFGVSNIINMLNSVddDDEQKGKMAESLILEAKIRKENPVYGCLAIERKLRLAIQETEKELEIVQK 112
               5************************************************66667799***************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    
MENADPVISN EKCAACMYLR KKCAANCQLA PYFPSDRTED FQNVYQLFGV SNIINMLNSV  60
DDDDEQKGKM AESLILEAKI RKENPVYGCL AIERKLRLAI QETEKELEIV QKTNAFYKEM  120
AKSQMQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.14e-27LBD family protein