PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32466

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 449aa MW: 50059.7 Da PI: 7.0257

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32466	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.5	4.6e-16	117	162	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+ +G+ +W++Ia+++ gR++k+c++rw++ OIT32466 117 RGHWRPAEDAKLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 162 899***************************.*********996 PP
2	Myb_DNA-binding	56.1	8.7e-18	169	212	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ OIT32466 169 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 212 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MSLSSSTSSS SSSPMSSTSM GMCFADMNSL SITPKHDNES TKTRGSWDFQ FLNKEAFSQS 60 LDEAETSEEN NETIDLNASC FNDEKPITMH SSTIFNSSSS NIGKEITESG QSKLCARGHW 120 RPAEDAKLKE LVAIYGPQNW NLIAEKLEGR SGKSCRLRWF NQLDPRINRR AFTEEEEERL 180 MAAHRLYGNK WAMIARLFPG RTDNAVKNHW HVIMARKYRE QSSAYRRRKM GQFVYRRTTV 240 EEDSNSSLFV SSSKEVAEVA MNGETQTPII SVGQNSANPF GSLKINNDGP NGWVVYGPNG 300 SPHMAASVGE AIPSTKTNVP LLSPYSPFFA PFDTLPGHCG NEEMNILNQQ GRSWERQREA 360 SNISHNIISH HHHSLHPSNS LMMLNSMQQQ SQCLQFPYSN FANVTTARAQ IPSQVIVKED 420 RRSSSSDNSQ CDAIAPPPPF IDFLGVGAT

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MSLSSSTSSS SSSPMSSTSM GMCFADMNSL SITPKHDNES TKTRGSWDFQ FLNKEAFSQS  60
LDEAETSEEN NETIDLNASC FNDEKPITMH SSTIFNSSSS NIGKEITESG QSKLCARGHW  120
RPAEDAKLKE LVAIYGPQNW NLIAEKLEGR SGKSCRLRWF NQLDPRINRR AFTEEEEERL  180
MAAHRLYGNK WAMIARLFPG RTDNAVKNHW HVIMARKYRE QSSAYRRRKM GQFVYRRTTV  240
EEDSNSSLFV SSSKEVAEVA MNGETQTPII SVGQNSANPF GSLKINNDGP NGWVVYGPNG  300
SPHMAASVGE AIPSTKTNVP LLSPYSPFFA PFDTLPGHCG NEEMNILNQQ GRSWERQREA  360
SNISHNIISH HHHSLHPSNS LMMLNSMQQQ SQCLQFPYSN FANVTTARAQ IPSQVIVKED  420
RRSSSSDNSQ CDAIAPPPPF IDFLGVGAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26780.1	3e-76	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT32466