PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT32558
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 222aa    MW: 24683.2 Da    PI: 8.4965
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT32558genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.95e-312103197
    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
               +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA  r+ +Pv+G+vg++++++++++q+++e++l
  OIT32558   2 SCNGCRVLRKGCSENCILRPCLqwietPEAQGHATIFVAKFFGRAGLMSFISAVPENQRPGLFQSLLYEAAGRTVNPVNGVVGLLWTGNWHVCQAAVETVL 102
               6***********************************************************************************************99987 PP

    DUF260  97 l 97 
               +
  OIT32558 103 R 103
               6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MSCNGCRVLR KGCSENCILR PCLQWIETPE AQGHATIFVA KFFGRAGLMS FISAVPENQR  60
PGLFQSLLYE AAGRTVNPVN GVVGLLWTGN WHVCQAAVET VLRGGTLSPI PELFGKSSEL  120
DEESECTHVF KLLNHTQNTR SKMQKRRGSS DEAAAKVLQL ENLDLSLLTR GFQSEIVYSP  180
LPEKRRPRTP SRKSEESVTT TYFESSLGDH QGKQPRLLSL FT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.15e-79LBD family protein