PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32649

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 369aa MW: 39540.2 Da PI: 9.5064

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32649	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.1	9e-36	69	175	2	108
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskksq 101 ++++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a+++i+e+tgt++ +a ++ +++ + + ++ s ++++++++++k++ OIT32649 69 TPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVKWLLEHAEQSIIEATGTGTVPAIAVsVNGTLKIPTTSPPS-NRENDENNPQKRR 168 6899************************************************************77777444211111111111111.1222222233333 PP TCP 102 ksaasal 108 +++++++ OIT32649 169 RKSSANS 175 3332233 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MSNFHDPDDE CGTSELSNGA GGDPNDQKND SNEFSDEKKV VLSALKQEPF DSDHHTLVPA 60 MAMPVATTTP RRSSTKDRHT KVEGRGRRIR IPATCAARIF QLTRELGHKS DGETVKWLLE 120 HAEQSIIEAT GTGTVPAIAV SVNGTLKIPT TSPPSNREND ENNPQKRRRK SSANSEFIDV 180 GNLNKNVANV SQFAPVTTTP VTIATGVPPP QGLMPVWAVG NGSVMVPSNA IWMIPATPPL 240 NVTNNNNIIN NNSNVMQYPQ LWTITPSVTP VFNLAGAARP ISSFVAATAA NTSRPPPTMA 300 AGPLSTGPKV GSNKSSMAPA SLSSSSGDRN NNNNDVKAHK LRDFSLEIYD RKELQFMGRS 360 GNQVTSSKP

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MSNFHDPDDE CGTSELSNGA GGDPNDQKND SNEFSDEKKV VLSALKQEPF DSDHHTLVPA  60
MAMPVATTTP RRSSTKDRHT KVEGRGRRIR IPATCAARIF QLTRELGHKS DGETVKWLLE  120
HAEQSIIEAT GTGTVPAIAV SVNGTLKIPT TSPPSNREND ENNPQKRRRK SSANSEFIDV  180
GNLNKNVANV SQFAPVTTTP VTIATGVPPP QGLMPVWAVG NGSVMVPSNA IWMIPATPPL  240
NVTNNNNIIN NNSNVMQYPQ LWTITPSVTP VFNLAGAARP ISSFVAATAA NTSRPPPTMA  300
AGPLSTGPKV GSNKSSMAPA SLSSSSGDRN NNNNDVKAHK LRDFSLEIYD RKELQFMGRS  360
GNQVTSSKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	3e-59	TCP family protein

Link Out ? help Back to Top
Ensembl	OIT32649