PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32733

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 151aa MW: 16989.6 Da PI: 10.3306

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32733	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00042	36	58	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+Fs+ L H +H OIT32733 36 FECKTCNKRFSSFQALGGHRTSH 58 89**********99998888777 PP
2	zf-C2H2	12.7	0.00037	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F L H+r+H OIT32733 80 HQCSICGMEFFMGQALGGHMRRH 102 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence
MTAMKRSRED DGEVEAQAMA NCSMLLSRLN NNTSSFECKT CNKRFSSFQA LGGHRTSHKS 60 LRSLSIDARS KSKKPKNNMH QCSICGMEFF MGQALGGHMR RHRAPINVPV LKKSNSSKRI 120 LCLDLNLTPD DQNDDFKLWP TAPAPVLRCF I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	3e-37	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT32733