PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32748

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 244aa MW: 28105 Da PI: 8.3271

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32748	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	90	144	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F+++ ++ +++eLA+kl+L+ rqV vWFqNrRa+ k OIT32748 90 RKKLRLTKEQSTLLEESFKRHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTK 144 678899***********************************************98 PP
2	HD-ZIP_I/II	115.1	4.2e-37	90	178	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLEesF+++++L +K+ela +L+l+prqv+vWFqnrRARtk+kq+E+++e Lk+++++l++en rL+ke eeLr+ OIT32748 90 RKKLRLTKEQSTLLEESFKRHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTKLKQTEVECELLKKCCENLNDENGRLKKELEELRS 178 69*************************************************************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MGNDNETCDT RLTLGLVTSD LLPKQNQLEE HKKIICLDLS IPLHSSDMEE KNTEGSTSKF 60 CKNDLRQALN SISPRNFNNF DYESKKNGMR KKLRLTKEQS TLLEESFKRH TTLAMGQKQE 120 LAAKLKLKPR QVEVWFQNRR ARTKLKQTEV ECELLKKCCE NLNDENGRLK KELEELRSIK 180 IDQWAPPFHL QLAKIRTIAL CPSCQNIKSE QKHCDLDSGS PKEASDAMFK EANSDNILVN 240 ENNN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	147	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22800.1	2e-32	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OIT32748