PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32793

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 258aa MW: 30450.3 Da PI: 8.5723

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32793	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.4	1.9e-19	35	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+++G g+W+++ar g++R +k+c++rw +yl OIT32793 35 KGPWTAEEDRLLIEYVNLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 82 79********************************************97 PP
2	Myb_DNA-binding	48.9	1.5e-15	88	132	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+++++++++ +G++ W+tIar ++ gRt++++k++w+++ OIT32793 88 RGQITPYEEKIILELHAIWGNR-WSTIARGLP-GRTDNEIKNYWRTH 132 6788999*************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MLLLSRQCTD RYTCRSKMTA EQMGNWGVIE EEWRKGPWTA EEDRLLIEYV NLHGEGRWNS 60 VARLAGLKRN GKSCRLRWVN YLRPDLKRGQ ITPYEEKIIL ELHAIWGNRW STIARGLPGR 120 TDNEIKNYWR THFKKSSTDK SQKTKARLLK RQLFQQQQQQ LNNQNDIKRL VLLFEENENN 180 NEVPNLSQEK QEMAFLYQNT AEQEQGGGFF YSTEASSKYE DIMWDYGLWN LDDFNANLNI 240 GAYNNSLPCM QTLATPFH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	5e-68	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT32793