PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT32971
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 465aa    MW: 53239.9 Da    PI: 6.629
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT32971genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.47.5e-91854611373
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++ Ll  A+av++++   a + L +l +++s  gd++qR+aayf+ +L arl+   s  y+ +   +t+    +ee+ a++ f++vsP+++f+h+t Nqa
  OIT32971  85 LIHSLLISATAVDDNSIDSAIENLHELYQNVSLFGDSVQRVAAYFADGLIARLLTRNSPFYDMIMKLPTQ----EEEFLAFTEFYKVSPFYQFAHFTSNQA 181
               57999999***********************************************9*****999888886....78889999******************* PP

      GRAS 102 Ileavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrledleleeL 194
               Ilea+e+e       +H+iDfdis+G+QWp+L+q+L++    ++  sl+iTg g+      +el+et+ rL +fA+ + +++fef+ +    l+  +l++L
  OIT32971 182 ILEAFEKEektnnGFLHVIDFDISYGFQWPSLIQSLSENIttSNRISLKITGYGK----TIDELRETETRLVSFAKDFrNLSFEFQGV----LSGSKLSNL 274
               *******955555567*********************988656677*********....99***************9758*******7....77888999* PP

      GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +++E+la+nl+++l +l   s    s+++++Lk v +l P +v++veqe   + ++Fl rf+e+l+y++a+fdsl+  lp +s er ++E+  lg+ei+
  OIT32971 275 IKRKNETLAINLIFHLNSLS--SY---SKISHTLKEVHNLCPSIVTIVEQEGCKSPQNFLPRFMESLHYFAAMFDSLDDCLPIDSIERLSIEKNHLGKEIK 370
               9999**********999997..33...33568********************************************************************* PP

      GRAS 296 nvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve...........eesgslvlgWkdrpLvsvSaW 373
               nv+  e+++    r e++e+W+ r+e+ GF  +pls+k+ +qaklll+  + s   +++           e+  ++ l W++r++v++SaW
  OIT32971 371 NVLNYEKNSnFLSRYEQMETWKGRMESHGFLGLPLSSKNIMQAKLLLKIRShSSPIQLDggnggfrifetEDPRAISLAWQHRSIVTASAW 461
               *****99883569**********************************876644333333444444443534455555************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    
MGDIVDQEEE LLCLRLAIVT NSCCERKKIK KRKRRELAFI NAWDLNESNY CEGKIFNLLE  60
LRESMLKIDV KKKGSVVEDG KGLHLIHSLL ISATAVDDNS IDSAIENLHE LYQNVSLFGD  120
SVQRVAAYFA DGLIARLLTR NSPFYDMIMK LPTQEEEFLA FTEFYKVSPF YQFAHFTSNQ  180
AILEAFEKEE KTNNGFLHVI DFDISYGFQW PSLIQSLSEN ITTSNRISLK ITGYGKTIDE  240
LRETETRLVS FAKDFRNLSF EFQGVLSGSK LSNLIKRKNE TLAINLIFHL NSLSSYSKIS  300
HTLKEVHNLC PSIVTIVEQE GCKSPQNFLP RFMESLHYFA AMFDSLDDCL PIDSIERLSI  360
EKNHLGKEIK NVLNYEKNSN FLSRYEQMET WKGRMESHGF LGLPLSSKNI MQAKLLLKIR  420
SHSSPIQLDG GNGGFRIFET EDPRAISLAW QHRSIVTASA WHCVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12735KKIKKRKRR
23035KKRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.13e-56GRAS family protein