PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT33028
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 767aa    MW: 85934.9 Da    PI: 6.7106
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT33028genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.51.8e-21102157156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  OIT33028 102 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLHPRQVKFWFQNRRTQIK 157
               7999************************************************9877 PP
2START220.26.5e-692795043206
               HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
     START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                ++a++el k+a+ +ep+W +s     e++n+de++++f++++         + +ea+r++g+v+m+l++lv++++d++ qW+e+++    ka+t++vi++
  OIT33028 279 VNKAMEELKKMATCGEPLWIRSFetgrEILNYDEYMKEFPTENPrdgrwpnkRCIEASRETGIVFMELPRLVQTFMDVN-QWKEMFPsmisKAATVDVICN 378
               6799******************99***************99999********99*************************.********************* PP

               T.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
     START  88 g.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
               g       ga+qlm+ae q+l+p+v  R+++fvRy++ql+ g+w+ivdvSvd  +++  ++s+v++++lpSg+ +++ sn h+kvtwveh +++++++h+l
  OIT33028 379 GegancwdGAVQLMFAEVQMLTPVVGtREVYFVRYCKQLSVGQWAIVDVSVDKVEDNI-DASLVKCRKLPSGCFLQEQSNAHCKVTWVEHLECQKSIVHSL 478
               ********************************************************98.9***************************************** PP

               HHHHHHHHHHHHHHHHHHHTXXXXXX CS
     START 181 lrslvksglaegaktwvatlqrqcek 206
               +r++v+sg+a+ga++w+atlq+qce+
  OIT33028 479 YRVIVNSGQAFGARRWMATLQQQCER 504
               ************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    
MGVVDMSNNH PPSHETKDFF PSPALSLSLA GIFRDGGNVE TEEVEDGSAS RGRPREESTV  60
EISSENSGPL RSRGSDDDFE HADITCNEED EDPNNNSKKK KRKKYHRHTA EQIREMEALF  120
KESPHPDEKQ RQQLSKQLGL HPRQVKFWFQ NRRTQIKAIQ ERHENSLLKA EIEKLREENK  180
GLRKTLKNPS CPNCGFTISS NNDAPTLPAE EHQLRIENAR LRAEVEKLRA ALGKYPIGTS  240
PNNNSSSSCS GGNEEENRSA LDYYTGIFGL EKSRIMHVVN KAMEELKKMA TCGEPLWIRS  300
FETGREILNY DEYMKEFPTE NPRDGRWPNK RCIEASRETG IVFMELPRLV QTFMDVNQWK  360
EMFPSMISKA ATVDVICNGE GANCWDGAVQ LMFAEVQMLT PVVGTREVYF VRYCKQLSVG  420
QWAIVDVSVD KVEDNIDASL VKCRKLPSGC FLQEQSNAHC KVTWVEHLEC QKSIVHSLYR  480
VIVNSGQAFG ARRWMATLQQ QCERLLFSMA TNIPTKDTTG VATLAGRKSI LTLAQRMTWS  540
FYRMLGASSY NTWNKIPSKT GQEDIRVASR KNLTDTGEPH GVILCAVSSI WLPVSRNVLF  600
DFLKDETRRH EWDVMSNGGP AQSVANLAKG QDKGNAVSIQ AVKLRENNMW ILQDTCTNAY  660
ESAVVYAPVD IAGMQSVITG CDSSNTAVLP SGFSILSDGI ESRGLVITSK PEDRSSEGGS  720
LLTIAFQILT SNSPTAKLSK ESVESVNNLL SSTLHKIKTS FQCDDAY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198103KKKKRK
298104KKKKRKK
3100104KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein