PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT33179

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 246aa MW: 28078.9 Da PI: 9.5488

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT33179	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.1	8.3e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s OIT33179 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59 79***********************************************96 PP
2	K-box	101.2	1.4e-33	81	174	7	100
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++ ++++ ++e+ +Lk+++e Lqr+qR+llGedL++L+ keL++Le+qL+ slk+iRskK++ +l+q+ +lq+ke++l e+nk+Lr+klee OIT33179 81 MQSASDHTQNNYHEYLRLKARVELLQRSQRNLLGEDLGTLNSKELEHLEHQLDASLKQIRSKKTQNMLDQLADLQQKEQMLAEANKQLRRKLEE 174 4567889************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFCST 60 SSMMQTLEKY QQCSYASLDP MQSASDHTQN NYHEYLRLKA RVELLQRSQR NLLGEDLGTL 120 NSKELEHLEH QLDASLKQIR SKKTQNMLDQ LADLQQKEQM LAEANKQLRR KLEESAARIP 180 LRLSWDNGGQ TMQHNRQLPP QTEGFFQPLG LNSSPQFGYS TPMGGNEVNA AATANNMNGF 240 IPGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.2	4e-99	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT33179