PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT33246
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 159aa    MW: 17560.1 Da    PI: 7.5004
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT33246genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.42.1e-3751051100
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +C aCk+lrrkC+k+C++apyf  eq +++fa+vhk+FGasn +kll ++p ++r +++ +l+yeA ar+rdPvyG+v++i++lqqq+ +l+aela+++++
  OIT33246   5 PCGACKYLRRKCVKGCIFAPYFDTEQgMSHFAAVHKVFGASNASKLLLSIPANRRLETVITLCYEALARVRDPVYGSVAHIFTLQQQVVTLQAELAYVQAR 105
               7**********************99988*********************************************************************9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    
MSSGPCGACK YLRRKCVKGC IFAPYFDTEQ GMSHFAAVHK VFGASNASKL LLSIPANRRL  60
ETVITLCYEA LARVRDPVYG SVAHIFTLQQ QVVTLQAELA YVQARLSTLQ SASSELAATT  120
YSYVSMDPLF DTTVLHHVLD QQLDNCDLHS VARDFHSTL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-59LBD family protein