PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT33444

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 172aa MW: 19273.6 Da PI: 10.5244

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT33444	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00038	38	60	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H OIT33444 38 FECKTCNKRFPSFQALGGHRASH 60 89**********99999998887 PP
2	zf-C2H2	13	0.0003	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ Fs L H+r+H OIT33444 82 HVCSICSMEFSLGQALGGHMRRH 104 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence
MIAMKRSRED DTKVEAEAMA NCLMFYSRLN NKTSSNEFEC KTCNKRFPSF QALGGHRASH 60 KRPKLLAGAG DFLVQSKKNK MHVCSICSME FSLGQALGGH MRRHRDEINK TSTAAGKLII 120 PVTGKKMIPV LKKSNSSKRI FCVDLNLSPH ENVDLKLWPT APVSSPVLRC FF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	2e-41	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT33444