PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT33448

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 180aa MW: 20060.1 Da PI: 8.6636

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT33448	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.0004	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H OIT33448 56 FECKTCNKRFPSFQALGGHRASH 78 89**********99999998887 PP
2	zf-C2H2	14.4	0.00011	100	122	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H OIT33448 100 HECSICGMEFSLGQALGGHMRRH 122 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence
MIAMKRSREE DRQVEAEAMA NCALMLLSRL NNNNTTSTDG DYVETSDDCG DCYHGFECKT 60 CNKRFPSFQA LGGHRASHKR PRLLAGAGEF LMQAKKNKMH ECSICGMEFS LGQALGGHMR 120 RHQKTPSLVA GKTMTPMLKK SNSSKRIFCG LDLNLSPDEN VELKLWPTTP VSSPVLRCFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53600.1	5e-33	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT33448