PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT33549

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 239aa MW: 27910.4 Da PI: 8.8602

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT33549	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.9	1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s OIT33549 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	97	2.9e-32	82	173	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++++++++qe++kLk+++e Lq++qRh+lGedL++L++keL+qLe+qL++sl++iRs++++ +l+q+++lq+ke++l e+n++L+ kl+e OIT33549 82 QSSTDSQNSYQEYTKLKARVEVLQQSQRHILGEDLGQLNIKELEQLERQLDSSLRQIRSRRTQNMLDQLSDLQQKEQSLLEINRSLKIKLDE 173 788999*********************************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSISKTLERY HRCSYSNLEA GQSSTDSQNS YQEYTKLKAR VEVLQQSQRH ILGEDLGQLN 120 IKELEQLERQ LDSSLRQIRS RRTQNMLDQL SDLQQKEQSL LEINRSLKIK LDENYVANQT 180 HWDTGEQNIQ FRHQPAQPQE FFQPLQCNNT MPNRYNQAPW DNIEQSTQNA TGVLPGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	1e-100	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT33549