PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT33589
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 510aa    MW: 57886.6 Da    PI: 5.4818
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT33589genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS341.81.1e-1041315093374
      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
               + Lle  +a+++++ +++q+l++ l+el+sp+gd+ q+la+yf++AL +r+++s++++y++l + ++++ + +++ + +  f+evsP+ +f+h++ N aI+
  OIT33589 131 DILLETSRAIADKNSTRVQQLMWMLNELSSPYGDTEQKLASYFLQALFNRMTDSGERCYRTLVSASDKTCSFESTRKLVLKFQEVSPWTTFGHVASNGAIM 231
               6799**********************************************************8888876555555455555******************** PP

      GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkp 198
               ea+ege+++Hi+D++ ++++QWp+Ll+aLa+R++++p+lR+T+v+   ++      ++ ++e+g+r++kfA+ +gvpf+fnv+++  +l++l++ +L++k+
  OIT33589 232 EAFEGESKLHIVDISNTYCTQWPTLLEALATRTDETPHLRLTTVVVGGATggtaaVQKVMKEIGSRMEKFARLMGVPFKFNVIHHMgNLSELDIGALDIKE 332
               ******************************************9998666678999999************************96656************** PP

      GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
               +Eala+n++ +lh++     ++ ++rd +++l+++l+P++v++ve+ead++ +    +F+++f e+l++  + f+sl++++p++s+er ++Er+  gr+iv
  OIT33589 333 DEALAINCIGALHSVS----PTGNRRDYLISLFRRLQPRIVTIVEEEADLDVGvdgfDFVKGFQECLRWIRVYFESLDESFPKTSNERLMLERQ-AGRSIV 428
               ***************8....7888899********************99865556669************************************.****** PP

      GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
               +++ac  +e+ er+et +kW++rl++ GF+p+ +s+++ +++++llr++k +g+++     +s+ ++l Wk++++v++SaW+
  OIT33589 429 DLLACPPSESMERRETGAKWSHRLHAGGFSPILYSDEVCDDVRALLRRYK-EGWTMTqcgGDSAGIFLSWKEQSVVWASAWK 509
               **************************************************.8877774446799999**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    
MDTLFRLVSL QQQQQQQSDQ SFNSSRTSSS SRSSNKQNTY NYPPHHNQED EECFNFFMDE  60
DDFSSNSSSK HNNYPPPYHY QQQQQQFSNT PTPTTTSSTP TQSHQYYDQF SPARDLNLEF  120
GSSFSGKWAT DILLETSRAI ADKNSTRVQQ LMWMLNELSS PYGDTEQKLA SYFLQALFNR  180
MTDSGERCYR TLVSASDKTC SFESTRKLVL KFQEVSPWTT FGHVASNGAI MEAFEGESKL  240
HIVDISNTYC TQWPTLLEAL ATRTDETPHL RLTTVVVGGA TGGTAAVQKV MKEIGSRMEK  300
FARLMGVPFK FNVIHHMGNL SELDIGALDI KEDEALAINC IGALHSVSPT GNRRDYLISL  360
FRRLQPRIVT IVEEEADLDV GVDGFDFVKG FQECLRWIRV YFESLDESFP KTSNERLMLE  420
RQAGRSIVDL LACPPSESME RRETGAKWSH RLHAGGFSPI LYSDEVCDDV RALLRRYKEG  480
WTMTQCGGDS AGIFLSWKEQ SVVWASAWKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein