PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT33655
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 361aa    MW: 41421.5 Da    PI: 9.9711
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT33655genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.5e-05119142123
               EEETTTTEEESSHHHHHHHHHH.T CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
               y C  Cg++F +++ L++H +  H
  OIT33655 119 YFCRVCGRRFYTNEKLVNHFKQiH 142
               78*****************98766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MMKRVKASTF IHAIRSYKRF CHFESKSHLG FGSLGSSVRT NVGIFWDLDN KPPKSFPPFE  60
AATKLKKAAG EFGVVRYTVA YANRHAFSYV PPLVRQQRKE RKTLNSLEKS GVVKVEEPYF  120
CRVCGRRFYT NEKLVNHFKQ IHEREHTKRL NQLESARGKM RVKLVAKYAM KMDKYKNAVR  180
DVLTPKVGYG LADELKRAGF WVRTVSDKPQ AADVALRNHL VDVMDKRMVE CVVLVSDDSD  240
FVEVLKEARL RCLKTVVVGD CNDGALKRTA DAAFSWQEIM MGKAKKEAVS VVGRWKDRDV  300
LKRLEWTYDP EVEKKQYYSK VESDDSDGLF SGEDDNKDVG ASISKEDARA WWELDSRSGH  360
D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-149C2H2 family protein