PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT33762

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 349aa MW: 38797.1 Da PI: 6.4012

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT33762	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.5	8.2e-15	36	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ G g+W+ +ar g+ R++k+c++rw +yl OIT33762 36 KGLWSPEEDEKLMHYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 83 678*******************************************97 PP
2	Myb_DNA-binding	50.8	3.7e-16	89	132	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el+++++ +lG++ W+ Ia +++ gRt++++k++w++ OIT33762 89 RGAFSPQEEELIIHLHSLLGNR-WSQIAGRLP-GRTDNEIKNFWNS 132 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MRKPEFSSSS SGKNGTNSNN NNNNNNNNNA NVKLRKGLWS PEEDEKLMHY MLTNGQGCWS 60 DVARNAGLQR CGKSCRLRWI NYLRPDLKRG AFSPQEEELI IHLHSLLGNR WSQIAGRLPG 120 RTDNEIKNFW NSSLKKRLKN SSSSSTPSPN ASDSSSEPCK DLNMGVNQGF MSMEKHKLMA 180 MYMDSTSSSS SSMALNTIID PLPTLEHSLM NMPSRFGAPS YLTTQPCMAQ GGNVTNGSLF 240 YGNNHGIFGG NLGIGGEIYV PPLESVSIEY QNVEVGNIVE RSSQNNNPNN NMTNLNNSHF 300 MNSSSNIKVE NFGGIGNYWE GDDLKVGEWD LEELMKDVSP FPFLDFQIE

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MRKPEFSSSS SGKNGTNSNN NNNNNNNNNA NVKLRKGLWS PEEDEKLMHY MLTNGQGCWS  60
DVARNAGLQR CGKSCRLRWI NYLRPDLKRG AFSPQEEELI IHLHSLLGNR WSQIAGRLPG  120
RTDNEIKNFW NSSLKKRLKN SSSSSTPSPN ASDSSSEPCK DLNMGVNQGF MSMEKHKLMA  180
MYMDSTSSSS SSMALNTIID PLPTLEHSLM NMPSRFGAPS YLTTQPCMAQ GGNVTNGSLF  240
YGNNHGIFGG NLGIGGEIYV PPLESVSIEY QNVEVGNIVE RSSQNNNPNN NMTNLNNSHF  300
MNSSSNIKVE NFGGIGNYWE GDDLKVGEWD LEELMKDVSP FPFLDFQIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12870.1	3e-53	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT33762