PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT33770
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family BBR-BPC
Protein Properties Length: 333aa    MW: 37085.7 Da    PI: 8.8724
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT33770genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind378.51.1e-11513331301
  GAGA_bind   1 mdddgsre..rnkg....yyepa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla. 92 
                mdd+g+++  r+k+    ++ ++ +s+k     q+m+++ erda+i+ernlalsek+aa+aerdma lqrd+a+aern a++erdn++++l+++ens++ 
   OIT33770   1 MDDSGHHDngRRKPpqgqWFMQHqPSMK-----QIMAIMGERDAAIQERNLALSEKRAALAERDMAILQRDSAIAERNSAIMERDNAIATLQYRENSMNs 95 
                8999988878666533344556657777.....****************************************************************999 PP

  GAGA_bind  93 ...salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader. 186
                   s +p+g+q+ +++k++++ qq +++ pql++++++ ++++++e+  +++ a    e +k+++++r+k++k+       kk++k+  kvkke++d + 
   OIT33770  96 gnmSPCPPGCQIAHEVKHMHHPQQhVHHqPQLGEPTFNHSDMHMNESSLLSSPAA--PEPTKSRRNKRSKEAKS---VTSSKKTSKPSTKVKKEGEDLNt 190
                99889******************964446**************999988776432..22222222233333333...32223333444445555544323 PP

  GAGA_bind 187 ............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagr 258
                                            sk ++k+++l+ln+vs+Dest+PvP+CsCtG+lr CYkWGnGGWqS+CCt ++S+yPLP+ +++r+aRi+gr
   OIT33770 191 tmldesqewngaqemgggsddvnrqlgvSKPDWKDQGLGLNQVSFDESTMPVPICSCTGVLRPCYKWGNGGWQSSCCTNNLSMYPLPTLPNKRHARIGGR 290
                45556677889***************************************************************************************** PP

  GAGA_bind 259 KmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                KmS++af+klL++LaaeG+dlsnpvDLkd WAkHGtn+++ti+
   OIT33770 291 KMSGSAFTKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYITIK 333
                ******************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MDDSGHHDNG RRKPPQGQWF MQHQPSMKQI MAIMGERDAA IQERNLALSE KRAALAERDM  60
AILQRDSAIA ERNSAIMERD NAIATLQYRE NSMNSGNMSP CPPGCQIAHE VKHMHHPQQH  120
VHHQPQLGEP TFNHSDMHMN ESSLLSSPAA PEPTKSRRNK RSKEAKSVTS SKKTSKPSTK  180
VKKEGEDLNT TMLDESQEWN GAQEMGGGSD DVNRQLGVSK PDWKDQGLGL NQVSFDESTM  240
PVPICSCTGV LRPCYKWGNG GWQSSCCTNN LSMYPLPTLP NKRHARIGGR KMSGSAFTKL  300
LSRLAAEGHD LSNPVDLKDN WAKHGTNRYI TIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-126BBR-BPC family protein