PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT33859
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 756aa    MW: 83007.5 Da    PI: 5.6579
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT33859genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665e-2189144156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               r++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R+++k
  OIT33859  89 RKRYHRHTQHQIQELEAYFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMK 144
               789999***********************************************999 PP
2START205.12.7e-642764961206
               HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
     START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
               ela +a++e+v++a  +ep+W+ s     + +n++e+ ++f+++ +     +++ea+r+++vv+m++++lve+l+d++  W+ ++     +a+t++v+s+g
  OIT33859 276 ELAVAAMEEFVQMAHMQEPLWFPSIengtSLLNEEEYFRIFPRGIGpkpdgFKTEASRDTAVVIMNHVNLVEILMDVN-HWSSMFSgvvsRASTIDVLSTG 375
               57899********************999999************999********************************.********************** PP

               ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS
     START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182
                     galq++ ae q++sp vp R+ +f+Ry++   +g+w++vdvS+d+ +  p    ++R++++pSg+li++++ng+skvtwveh++++++ +h +++
  OIT33859 376 vagnfnGALQVILAEIQVPSPQVPtRECYFARYCKHRVDGTWAVVDVSLDHLRAIP----SARCRRRPSGCLIQEMPNGYSKVTWVEHIEVDDSAVHDIYK 472
               ******************************************************99....5**************************************** PP

               HHHHHHHHHHHHHHHHHTXXXXXX CS
     START 183 slvksglaegaktwvatlqrqcek 206
               +lv+sg+a+gak+w atl+rqce+
  OIT33859 473 PLVSSGIAFGAKRWIATLDRQCER 496
               **********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    
MPSRISRRAN KMSSLVVNDG TDIGFSSSGL PLGQSSSMMD SQLHSLDMLS NTSESEMPRL  60
SSEDFGSKSG NEGNSGGDEQ DVNNKSLKRK RYHRHTQHQI QELEAYFKEC PHPDDKQRKE  120
LSRELGLEPL QIKFWFQNKR TQMKTKNERS ENSQLRAENE KLRAENLRFR EALGNVSCPN  180
CGGQPPIGEM SYDEHHLRLE NTRLREEIER ISNIASKYVG KPFSNHNNGY SPPLDLGVPA  240
FSTPQSVNGD AYGDGEDVII SSIIGPTDAE KPFIIELAVA AMEEFVQMAH MQEPLWFPSI  300
ENGTSLLNEE EYFRIFPRGI GPKPDGFKTE ASRDTAVVIM NHVNLVEILM DVNHWSSMFS  360
GVVSRASTID VLSTGVAGNF NGALQVILAE IQVPSPQVPT RECYFARYCK HRVDGTWAVV  420
DVSLDHLRAI PSARCRRRPS GCLIQEMPNG YSKVTWVEHI EVDDSAVHDI YKPLVSSGIA  480
FGAKRWIATL DRQCERLASA MATNFPTNDL SNMVLTNQDS RKSMLKLAER MVNSFCSGVS  540
ATAGNQWTTL SGSGSDDNVR VMTRKSVDDP GRPPGIVLSA ATSFWLPISP KRVFDFLRDE  600
NTRSEWDILS NGGVVQEMAH IANGRETGNC VSLLRVNSSN SSQSNMLILQ ESSTDPTNSY  660
VIYAPVDIAA MNIVLGGGDP DFVALLPSGF AILPDGPPGN SRVGCGGSLL TVAFQILVDS  720
IPTAKLSLGS VATVNNLIAC TVERIKGALL SESTPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0HD-ZIP family protein