PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT33870

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 693aa MW: 75601.9 Da PI: 7.5779

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT33870	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.6e-07	280	300	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg OIT33870 280 PCPEFRK-GACQRGDMCEYAHG 300 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence
MTMNNLAVET VDTFASLLEL AANNDIAAFK RWIERDLSSI HEVGQWYGRQ KGSKQMVLEY 60 RTALMIAATY GSIDVLKLIL SVPDVDVNRS CGHDKSTALH CAASGGSLNA AEAVKLLLGA 120 GADPKSKDVN GCCPIDVIVV SPNFLSVKSS LENLLKTGGI RDCELRVSIA TSNSNSPPRS 180 PSRGNRSPSS ASDSNSSPKS AKSNDTPVYS IPEKKEYPID PSLPDIKNNI YSTDEFRMFS 240 FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACQ RGDMCEYAHG 300 VFECWLHPAQ YRTRLCKDGT DCNRRVCFFA HMQEELRPLY VSTGSAVPSP RGSTAANAMD 360 FAAAMGLIPG SPSSVSVMSP SPFSPPMSPS ANGISSMGWP QQNVPALHLP GSFLHSSRLR 420 SSLNARDIPA ADLNAYPDFD VQRQLLNDFS CLSQRNMSSN SFNCSPRQMS HARANLEDLF 480 SAESSSPRYS DQALAQAGFS PTHKSAVCSQ LQQQQSLLSP INTNFSPRNV DNPLLQASFG 540 VPSSGRMSPR AMDPISPRSP RVSILAQRDK QHQFRSFSSR DLGSNVSAIV GSLADTWGTA 600 MGKPDWAVNT GEFGRLRRSS SFELANNGEE PDISWVQSLV KESPPEMMKD KCVPHVSGPT 660 GAVADLGEGS TSSSQIDQSD QLSAWMEQMK LDQ

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence

MTMNNLAVET VDTFASLLEL AANNDIAAFK RWIERDLSSI HEVGQWYGRQ KGSKQMVLEY  60
RTALMIAATY GSIDVLKLIL SVPDVDVNRS CGHDKSTALH CAASGGSLNA AEAVKLLLGA  120
GADPKSKDVN GCCPIDVIVV SPNFLSVKSS LENLLKTGGI RDCELRVSIA TSNSNSPPRS  180
PSRGNRSPSS ASDSNSSPKS AKSNDTPVYS IPEKKEYPID PSLPDIKNNI YSTDEFRMFS  240
FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACQ RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGT DCNRRVCFFA HMQEELRPLY VSTGSAVPSP RGSTAANAMD  360
FAAAMGLIPG SPSSVSVMSP SPFSPPMSPS ANGISSMGWP QQNVPALHLP GSFLHSSRLR  420
SSLNARDIPA ADLNAYPDFD VQRQLLNDFS CLSQRNMSSN SFNCSPRQMS HARANLEDLF  480
SAESSSPRYS DQALAQAGFS PTHKSAVCSQ LQQQQSLLSP INTNFSPRNV DNPLLQASFG  540
VPSSGRMSPR AMDPISPRSP RVSILAQRDK QHQFRSFSSR DLGSNVSAIV GSLADTWGTA  600
MGKPDWAVNT GEFGRLRRSS SFELANNGEE PDISWVQSLV KESPPEMMKD KCVPHVSGPT  660
GAVADLGEGS TSSSQIDQSD QLSAWMEQMK LDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT33870