PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT33874

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 429aa MW: 48963.5 Da PI: 8.6847

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT33874	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.2	1.3e-29	102	187	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ ++++yf+qlea OIT33874 102 RWPRQETLTLLEVRSQLDSKFKEANQKGPLWNEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRYFRQLEA 187 8***********************************999*************************98..55667*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MDDHEYGMMD LTQYINGRPL SASPHLQSDF LCSNQHYEMV MASSNTTVPQ HDNCLPHPAA 60 AATARPSVSG GGGGATFSTA SEVKGCGGGG AMRGGGDGGN GRWPRQETLT LLEVRSQLDS 120 KFKEANQKGP LWNEVSRIMS EEHGYQRSGK KCREKFENLY KYYKKTKEGK AGRQDGKHYR 180 YFRQLEALYG KTSDTISISE TNNIGSSNFH YNNPINNNNQ EAHNFHRRGP KLSDSLISPS 240 DSSDSDRATS SDDSELKMDD DSKEKRKKKR GKRSWKGKIK DFVDIQMKEL IEKQEAWLEK 300 VMKTIEHKEQ ERILREEEWR KQESIRIEKE QQFWAGERAW IEARDAALID ALHKLSGNQE 360 LIIKSNKNAS ICKDMNWDGI NGYLIKSNKK QKENYLSSYY NFKNNEEGRS YCETSRHVPN 420 VQVMDPGMF

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MDDHEYGMMD LTQYINGRPL SASPHLQSDF LCSNQHYEMV MASSNTTVPQ HDNCLPHPAA  60
AATARPSVSG GGGGATFSTA SEVKGCGGGG AMRGGGDGGN GRWPRQETLT LLEVRSQLDS  120
KFKEANQKGP LWNEVSRIMS EEHGYQRSGK KCREKFENLY KYYKKTKEGK AGRQDGKHYR  180
YFRQLEALYG KTSDTISISE TNNIGSSNFH YNNPINNNNQ EAHNFHRRGP KLSDSLISPS  240
DSSDSDRATS SDDSELKMDD DSKEKRKKKR GKRSWKGKIK DFVDIQMKEL IEKQEAWLEK  300
VMKTIEHKEQ ERILREEEWR KQESIRIEKE QQFWAGERAW IEARDAALID ALHKLSGNQE  360
LIIKSNKNAS ICKDMNWDGI NGYLIKSNKK QKENYLSSYY NFKNNEEGRS YCETSRHVPN  420
VQVMDPGMF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	273	KRKKKRGKR
2	266	273	RKKKRGKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	4e-54	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OIT33874