PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT34059

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 230aa MW: 26095.8 Da PI: 4.8897

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT34059	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.3	3.6e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien+ rqvtfskRr+g++KKA+EL +LCdaev v++fs+tgklye++s OIT34059 9 KMIENTNSRQVTFSKRRQGLMKKAKELAILCDAEVGVLVFSNTGKLYEFAS 59 68***********************************************86 PP
2	K-box	67.4	4.7e-23	85	173	12	100
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 a + ++q e++ L++e+ L++ q +l+G++L+ L++k+LqqLe+qL +++ +++kK+++ll +ie++ +e++++ en+aLr+++ee OIT34059 85 AAEHEWQPEVNELRAEVALLRQMQSRLMGKELDGLNFKDLQQLEHQLTEGILAVKDKKEQVLLGKIEKSLLQEEKVSLENEALREQIEE 173 44568*********************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MGRGKIEIKM IENTNSRQVT FSKRRQGLMK KAKELAILCD AEVGVLVFSN TGKLYEFASS 60 SMENILSRYN KAPESSELTT IENVAAEHEW QPEVNELRAE VALLRQMQSR LMGKELDGLN 120 FKDLQQLEHQ LTEGILAVKD KKEQVLLGKI EKSLLQEEKV SLENEALREQ IEELRRSSRH 180 CEERALALDN SVCDSDTCLR LGLPVDTSQN MIIPKMESTS NDAQNTMVLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	2e-57	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT34059