PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT34113
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 207aa    MW: 23491.6 Da    PI: 8.2389
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT34113genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.69.3e-201562249
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              +i+n++n qvtfskR+ g++KKA+EL++L +aeva++ fs+ +k+y +
  OIT34113 15 KIQNERNLQVTFSKRQFGLFKKASELCTLNGAEVALVGFSPGNKVYSF 62
              599*******************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MGRKSNGRKK MDMVKIQNER NLQVTFSKRQ FGLFKKASEL CTLNGAEVAL VGFSPGNKVY  60
SFGHPSVDLV IDRFVTENSQ PNIDVPNHLI EAHRNANVRE VNMDELIDKE GILEMERRHG  120
KALQRTWGDA TPDERWWKAP IENLNFFQLR EVAEAMEMIK KQCEIEAEHQ QKVQGIAFPY  180
RTLGSALAPY GGATESSSNA RPSEFRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-43M-type_MADS family protein