PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT34237

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 390aa MW: 44889.2 Da PI: 6.0937

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT34237	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.9	5.5e-23	82	170	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdqle 86 +Wt+++v++Li+a+++++e++ +++ kk++W+++s +m+erg ++sp+qC++k+++lnk++k++++ +++t + ++++ ++++ ++ OIT34237 82 KWTDEMVKLLITAVSYIGEDVLSNRlfIKKGKWRAISCVMAERGHHVSPQQCEDKFNDLNKKFKRLNDVLGRGTaCHVVENSALLEMMD 170 7*****************998875579******************************************5488898888888775 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MQVNHQLTDH PNQGPVVLGQ HAPEVMSFGV SNMEDIDQEM QLLDSIKFNS VEMPEAYHEG 60 MNDVTEVSGH AEEKQPVYHR MKWTDEMVKL LITAVSYIGE DVLSNRLFIK KGKWRAISCV 120 MAERGHHVSP QQCEDKFNDL NKKFKRLNDV LGRGTACHVV ENSALLEMMD LSDDLKEEIK 180 KLLGSKQLFY QELCSYNNQN RLFLPHDQEV QKSVLLAVKG KDKCETENVL QDFPLKRKTG 240 GEERVSNMTC GSLNCTTTAN PNLVHDMPAK RKVGGEEREL NMAHSSLNGT TTLDPNVLHP 300 YNNEIHASMN NEEREIQDEH VPPRLLQLEE QKLQIQAQIL ELEKKRFKHM RFCSKEDKEL 360 QKMMLDNEAI KLENQRLVLE LKRSGMRPFD

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MQVNHQLTDH PNQGPVVLGQ HAPEVMSFGV SNMEDIDQEM QLLDSIKFNS VEMPEAYHEG  60
MNDVTEVSGH AEEKQPVYHR MKWTDEMVKL LITAVSYIGE DVLSNRLFIK KGKWRAISCV  120
MAERGHHVSP QQCEDKFNDL NKKFKRLNDV LGRGTACHVV ENSALLEMMD LSDDLKEEIK  180
KLLGSKQLFY QELCSYNNQN RLFLPHDQEV QKSVLLAVKG KDKCETENVL QDFPLKRKTG  240
GEERVSNMTC GSLNCTTTAN PNLVHDMPAK RKVGGEEREL NMAHSSLNGT TTLDPNVLHP  300
YNNEIHASMN NEEREIQDEH VPPRLLQLEE QKLQIQAQIL ELEKKRFKHM RFCSKEDKEL  360
QKMMLDNEAI KLENQRLVLE LKRSGMRPFD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	1e-62	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OIT34237