PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT34307

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 468aa MW: 51960.3 Da PI: 9.1921

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT34307	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	53	73	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H OIT34307 53 CEICGKGFQRDQNLQLHRRGH 73 *******************88 PP
2	zf-C2H2	13.5	0.00021	127	149	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ OIT34307 127 WKCEKCSKRYAVQSDWKAHSKTC 149 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MTEEVISSGF NSIEGSNPLP LKKKRNLPGN PDPEAEVIAL SPKTLMATNR FLCEICGKGF 60 QRDQNLQLHR RGHNLPWKLK QRTSKEVRKR VYVCPEKSCV HHHASRALGD LTGIKKHYCR 120 KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYRCDCGT IFSRRDSFVT HRAFCDALAE 180 ETARVTAASN MHNPLAGNNI NYHFIGSPLG PNMAQHFSSL FKPISTNNEN SDPIMRRDQL 240 SLWNMEQVSQ QQQTIGNNNL QEIHQIGPLI QTSAAAVYDT NTLLAPRSNP PPVNYNHVNW 300 EQLTNTSSAN VTVPSLFSNQ HQSHQQITPS STASMSATAL LQKAAQIGAT TTTTDPSFLG 360 NNFGMNNCNV KNNNVQVQEV NNNKLCGFYV TTTNNSITTS LGSEVDQGSV NDLSTLNQLQ 420 MYNPPSKRRH IQTREDSVTG GGVGGQTRDF LGVGVQSICH PSSINGWI

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MTEEVISSGF NSIEGSNPLP LKKKRNLPGN PDPEAEVIAL SPKTLMATNR FLCEICGKGF  60
QRDQNLQLHR RGHNLPWKLK QRTSKEVRKR VYVCPEKSCV HHHASRALGD LTGIKKHYCR  120
KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYRCDCGT IFSRRDSFVT HRAFCDALAE  180
ETARVTAASN MHNPLAGNNI NYHFIGSPLG PNMAQHFSSL FKPISTNNEN SDPIMRRDQL  240
SLWNMEQVSQ QQQTIGNNNL QEIHQIGPLI QTSAAAVYDT NTLLAPRSNP PPVNYNHVNW  300
EQLTNTSSAN VTVPSLFSNQ HQSHQQITPS STASMSATAL LQKAAQIGAT TTTTDPSFLG  360
NNFGMNNCNV KNNNVQVQEV NNNKLCGFYV TTTNNSITTS LGSEVDQGSV NDLSTLNQLQ  420
MYNPPSKRRH IQTREDSVTG GGVGGQTRDF LGVGVQSICH PSSINGWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-149	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT34307