PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT34333
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 22724 Da    PI: 10.1044
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT34333genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.29.1e-28959151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              krien++ rqvtfskRr+g+lKKA+ELS+LCdaeva++ifs++gk y ++s
  OIT34333  9 KRIENQTSRQVTFSKRRTGLLKKAFELSILCDAEVALLIFSPSGKAYQFAS 59
              79**********************************************986 PP
2K-box64.73.4e-22861701498
     K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
               +e  + +++ + + i++L+   +h+ GedL++L +keL+qLe+qL  ++++iRskK +++ e+i+ l++k k l++en  L+k++
  OIT34333  86 TEVRRSDIEGMTRTIDELEARDKHFAGEDLSTLGMKELKQLERQLRIGVERIRSKKGRIISEHINWLKRKHKILHDENIHLQKQV 170
               5556678889999******99*************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MGRGKVELKR IENQTSRQVT FSKRRTGLLK KAFELSILCD AEVALLIFSP SGKAYQFASH  60
DIDRTILRYK NEVGLSKTND QGFKATEVRR SDIEGMTRTI DELEARDKHF AGEDLSTLGM  120
KELKQLERQL RIGVERIRSK KGRIISEHIN WLKRKHKILH DENIHLQKQV RLHELREGEG  180
SSTILDSDAS CELQCRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.14e-47MIKC_MADS family protein