PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT34425

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 265aa MW: 29574.2 Da PI: 8.5777

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT34425	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.4e-18	121	175	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k q Lee F+++++++ +++++LA+ l+L rqV vWFqNrRa+ k OIT34425 121 RKKLRLSKAQSALLEESFKQHSTLNPKQKQDLARDLNLRPRQVEVWFQNRRARTK 175 778899***********************************************98 PP
2	HD-ZIP_I/II	124.4	5.4e-40	121	209	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlsk q++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eL+ + OIT34425 121 RKKLRLSKAQSALLEESFKQHSTLNPKQKQDLARDLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLHKELQELK-A 209 69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence
MGSFDDISNT GLVLGLGFST RVDQKSTKIL LAGKGPSLGF EPSLTLSLSG DPTYNEQQQA 60 AKKVKNDHQS ADLYRQDSAA SSYSNASVKR ERDAGSEETT TEVERLSSRV SDEDDDGSNA 120 RKKLRLSKAQ SALLEESFKQ HSTLNPKQKQ DLARDLNLRP RQVEVWFQNR RARTKLKQTE 180 VDCEFLKKCC ETLTEENRRL HKELQELKAV KIAQPLYMQL PAATLTMCPS CERIGGVGEN 240 PSKNPFTLAQ KPHFYNSFTN PSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	178	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-93	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OIT34425