PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT34487
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92217.6 Da    PI: 6.5419
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT34487genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.1e-191775357
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
              k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OIT34487 17 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
              5679*****************************************************97 PP
2START173.51.3e-541613692205
               HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTT CS
     START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqa 100
               +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l +++l+a
  OIT34487 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAIDVLNVLPTAngGTIELLYMQLYA 260
               789*******************************************************.8888888888****************9999************ PP

               XX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHH CS
     START 101 lsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwv 197
               +++l+p Rdf+ +Ry+  + +g++v++++S+ ++q+ p+    +++vRae lpSg+li+p+++g+s +++v+h++l++++++++lr+l++s+++ ++kt+v
  OIT34487 261 PTTLAPaRDFWLLRYTTVMDDGSLVVCERSLGNTQNGPSmppVQNFVRAEILPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLYESSAVLAQKTTV 361
               ************************************99988899********************************************************* PP

               HHTXXXXX CS
     START 198 atlqrqce 205
               a+l+++++
  OIT34487 362 AALRYLRQ 369
               ***99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    
MASCKDGKTS SVMDNGKYVR YTPEQVEALE RLYHDCPKPS SMRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRRQ  120
THSTTLATKD TSCESVVTSG QHHLTSQHPP RDASPAGLLS IAEETLTEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIIAISH GCTGVAARAC GLVGLEPTRV AEILKDRPSW FRDCRAIDVL  240
NVLPTANGGT IELLYMQLYA PTTLAPARDF WLLRYTTVMD DGSLVVCERS LGNTQNGPSM  300
PPVQNFVRAE ILPSGYLIRP CEGGGSIIHI VDHMNLEAWS VPEVLRPLYE SSAVLAQKTT  360
VAALRYLRQI AQEVSQTNVT NWGRRPAALR ALSQRLNRGF NEALNGLTDE GWSMLGSDGM  420
DDITLLVNSS PDKLMGLNLS FTNGFSSLSN AVMCAKASML LQNVPPAILL RFLREHRSEW  480
ADNNIDAYSA AAIKVGPCCL PGARVGNFGG QVILPLAHTV EHEELLEVIK LEGVGHSPED  540
AIMPRDMFLL QLCSGMDENA VGTSAELIFA PIDASFADDA PLLPSGFRII SLESGKESSS  600
PNRTLDLTSA LETGPAENKV GNDLHTNGGT SRSVMTIAFQ FAFESHMQEN VASMARQYVR  660
SIISSVQRVA LALSPSHLGS HGGLRLPLGT PEAHTLARWI CQSYRCFLGV ELLKSIAEGS  720
ESILKSLWHH SDAIICCSAK AMPVFTFANQ AGLDMLETTL VALQDITLEK IFDDHGKKNL  780
CTEFPQIMQQ GFACLQGGIC LSSMSRPISY ERAVAWKVMN EEDSPHCICF MFVNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein