PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT34496
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 535aa    MW: 60423.9 Da    PI: 7.8413
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT34496genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP68.71.1e-21211257248
               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
               Cqv gC++dls+ k+yh+rhkvC+ hsk+++v+v+g+eqrfCqqCsr
  OIT34496 211 CQVYGCNKDLSSSKDYHKRHKVCDEHSKSAKVIVHGIEQRFCQQCSR 257
               **********************************************9 PP
2SBP100.71.2e-312573142077
               HTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
       SBP  20 rhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
               rhkvC+ hsk+++v+v+g+eqrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk+q
  OIT34496 257 RHKVCDEHSKSAKVIVHGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKPQ 314
               9*******************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    
MEPMNYALEG RGILFPDNNE MPVGALARSR NIVKDWNLNN FSDVDKTMFG TIQEITENIE  60
FSESGIADIL KKCATSNQGS EGLGAETVDS SRKVLSISVN TLDSILGEVE LKERSNHIAN  120
RCNDPISLPV GLKLEQLVDH REVRSISSSK GSSLLSLLPA EKARSQEDDL IVYKVKSNSS  180
LMENPALSSL EPLLLGKRSR TTNVDSQVPL CQVYGCNKDL SSSKDYHKRH KVCDEHSKSA  240
KVIVHGIEQR FCQQCSRHKV CDEHSKSAKV IVHGIEQRFC QQCSRFHLLA EFDEGKRSCR  300
KRLAGHNERR RKPQFDTHWG SRLFEMTSQR RASFLFPEIH PGSSFSQERF EDHSKHIKLE  360
EKPICISQLA MAVTKKQSPL KSFQHPVRAT FSVQELSAGQ NSTCALSLLS AHSQHHLHNS  420
EYHCPHLKRD HNLQNFCGLS ASGSFTSNEL YSSEVFEIDR IAQVLDDSQA VSTDDLRQRR  480
VRRSNSMKSK HDLSPEDGPT VDLVQLSSHL QRVEQLKNSD QVKQENDIFR CFTTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-46SBP family protein