PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT34497
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family YABBY
Protein Properties Length: 181aa    MW: 19841.3 Da    PI: 8.8945
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT34497genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY146.62.4e-45231651163
     YABBY   1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101
               +d+++sse++Cyv+C+fCnt+lav +P++ l+ +vtv+CGhC++l  ++ +           l+ +  ++   ++  +++++ s  +k +s+ +       
  OIT34497  23 MDLVQSSEHLCYVRCSFCNTVLAVGIPYKRLLDTVTVKCGHCSNLSFLSTR---------PPLQGQCFDH---QTALQHQAFFSDFKKGQSS-S------- 103
               57899**************************************97553222.........2222222222...2233334443333333222.2....... PP

     YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
               s++++ ++p++p v++PPek+ r Psaynrf+k+eiqrika+nP+i hreafsaaaknWa +
  OIT34497 104 SSSSEPSSPKAPFVVKPPEKKHRLPSAYNRFMKDEIQRIKAANPEIPHREAFSAAAKNWARY 165
               2334557899999***********************************************75 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MSSSSPSSAS SCVNLEAADR NSMDLVQSSE HLCYVRCSFC NTVLAVGIPY KRLLDTVTVK  60
CGHCSNLSFL STRPPLQGQC FDHQTALQHQ AFFSDFKKGQ SSSSSSSEPS SPKAPFVVKP  120
PEKKHRLPSA YNRFMKDEIQ RIKAANPEIP HREAFSAAAK NWARYIPNTP NGTLAESSNN  180
A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-67YABBY family protein