PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT34502

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 195aa MW: 22367.2 Da PI: 9.5734

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT34502	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.2	4.3e-09	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l v+++G W+ +++ g+ R +k+ +rw +yl OIT34502 14 KGAWSEDEDKKLRVFVEKHGHSIWRQLPKYAGLMRYGKSRGLRWMNYL 61 79******************************7777777799999986 PP
2	Myb_DNA-binding	48	2.8e-15	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ + eE+el+++++++lG++ W++Ia+++ gR+++++k+ w+ + OIT34502 67 KGNYSLEEEELIIKLHNELGNR-WSAIAEKLL-GRSDNDIKNQWHAH 111 7899****************.****9.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence
MVRTPSIDKN GMKKGAWSED EDKKLRVFVE KHGHSIWRQL PKYAGLMRYG KSRGLRWMNY 60 LRPCLKKGNY SLEEEELIIK LHNELGNRWS AIAEKLLGRS DNDIKNQWHA HLKKRANTHT 120 NSSTSTEQFT ESSQSQDEQS SCKVSEQDAG CDTKELPSAS LNAIDTSVEV SSTDLSKLKL 180 KKITTGQWNY FQFSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16490.1	3e-48	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT34502