PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT34503
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 230aa    MW: 26829.9 Da    PI: 6.4214
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT34503genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+  v+++G ++W+  +++ g+ R++k+c++rw ++l
         OIT34503 14 RGAWSEEEDNKLKAFVERFGHPNWRQLPKHAGLMRCGKSCRLRWMNHL 61
                     89********************************************97 PP
2Myb_DNA-binding52.31.3e-1668111247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       + + eE+el+++++k++G++ W++Ia++++ gR+++++k+ w+ +
         OIT34503  68 ENYSLEEEELIIKLHKEHGNR-WSAIAARLP-GRSDNDVKNQWHAH 111
                      67899****************.*********.***********976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MVRTPSVDKN GIKRGAWSEE EDNKLKAFVE RFGHPNWRQL PKHAGLMRCG KSCRLRWMNH  60
LRPGLKKENY SLEEEELIIK LHKEHGNRWS AIAARLPGRS DNDVKNQWHA HLKKRAKTNT  120
TSNSPIMEQF SEYSQSSYSM REVPSASLNA IDTSATSTEV SSTDLSDLYS SCSLLNEMDW  180
IEEDHITSME QLPADFFNFC WTNPIDNFQT EPFDNFQTEP LDHFWRQPFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKKRAKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-46MYB family protein